STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANI91505.1Carnitine transport permease protein OpuCB. (269 aa)    
Predicted Functional Partners:
ANI91504.1
Putative osmoprotectant uptake system substrate-binding protein OsmF.
 
 0.999
ANI91506.1
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
 0.997
ANI91507.1
Choline transport system permease protein OpuBB.
 
  
 
0.986
ANI92784.1
Hypothetical protein.
  
 
 0.897
ANI91503.1
UPF0033 protein YrkF.
       0.664
Your Current Organism:
Dietzia timorensis
NCBI taxonomy Id: 499555
Other names: BTCC B-560, D. timorensis, Dietzia timorensis Yamamura et al. 2010, NBRC 104184, strain ID05-A0528
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.