ANI92022.1 protein (Dietzia timorensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Neighborhood

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[Homology]

Score

ANI92022.1

Uncharacterized protein. (166 aa)

Predicted Functional Partners:

ANI92023.1

0.890

ANI93546.1

0.519

cobB

0.467

ANI92010.1

0.467

ANI92832.1

0.463

ANI91021.1

0.461

ANI93378.1

0.461

ANI91685.1

0.459

ANI91938.1

0.459

ANI90934.1

0.453

Your Current Organism:

Dietzia timorensis

NCBI taxonomy Id: 499555
Other names: BTCC B-560, D. timorensis, Dietzia timorensis Yamamura et al. 2010, NBRC 104184, strain ID05-A0528

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANI90934.1	ANI92022.1	BJL86_0123	BJL86_1237	Hypothetical protein.	Uncharacterized protein.	0.453
ANI91021.1	ANI91685.1	BJL86_0210	BJL86_0892	Transcriptional regulator LytR.	Hypothetical protein.	0.541
ANI91021.1	ANI91938.1	BJL86_0210	BJL86_1148	Transcriptional regulator LytR.	Hypothetical protein.	0.541
ANI91021.1	ANI92010.1	BJL86_0210	BJL86_1225	Transcriptional regulator LytR.	NAD-dependent protein deacetylase 1.	0.655
ANI91021.1	ANI92022.1	BJL86_0210	BJL86_1237	Transcriptional regulator LytR.	Uncharacterized protein.	0.461
ANI91021.1	ANI93378.1	BJL86_0210	BJL86_2618	Transcriptional regulator LytR.	Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	0.655
ANI91021.1	ANI93546.1	BJL86_0210	BJL86_2786	Transcriptional regulator LytR.	Hypothetical protein; Belongs to the sigma-70 factor family.	0.585
ANI91021.1	cobB	BJL86_0210	BJL86_0737	Transcriptional regulator LytR.	NAD-dependent protein deacylase 2; Belongs to the sirtuin family. Class III subfamily.	0.655
ANI91685.1	ANI91021.1	BJL86_0892	BJL86_0210	Hypothetical protein.	Transcriptional regulator LytR.	0.541
ANI91685.1	ANI92010.1	BJL86_0892	BJL86_1225	Hypothetical protein.	NAD-dependent protein deacetylase 1.	0.456
ANI91685.1	ANI92022.1	BJL86_0892	BJL86_1237	Hypothetical protein.	Uncharacterized protein.	0.459
ANI91685.1	ANI93378.1	BJL86_0892	BJL86_2618	Hypothetical protein.	Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	0.492
ANI91685.1	ANI93546.1	BJL86_0892	BJL86_2786	Hypothetical protein.	Hypothetical protein; Belongs to the sigma-70 factor family.	0.460
ANI91685.1	cobB	BJL86_0892	BJL86_0737	Hypothetical protein.	NAD-dependent protein deacylase 2; Belongs to the sirtuin family. Class III subfamily.	0.456
ANI91938.1	ANI91021.1	BJL86_1148	BJL86_0210	Hypothetical protein.	Transcriptional regulator LytR.	0.541
ANI91938.1	ANI92010.1	BJL86_1148	BJL86_1225	Hypothetical protein.	NAD-dependent protein deacetylase 1.	0.456
ANI91938.1	ANI92022.1	BJL86_1148	BJL86_1237	Hypothetical protein.	Uncharacterized protein.	0.459
ANI91938.1	ANI93378.1	BJL86_1148	BJL86_2618	Hypothetical protein.	Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	0.492
ANI91938.1	ANI93546.1	BJL86_1148	BJL86_2786	Hypothetical protein.	Hypothetical protein; Belongs to the sigma-70 factor family.	0.460
ANI91938.1	cobB	BJL86_1148	BJL86_0737	Hypothetical protein.	NAD-dependent protein deacylase 2; Belongs to the sirtuin family. Class III subfamily.	0.456