STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANI92555.1Putative amino acid permease YdaO. (667 aa)    
Predicted Functional Partners:
ANI92557.1
Trk system potassium uptake protein TrkA.
 
   
 0.884
ANI92556.1
Trk system potassium uptake protein TrkA.
 
   
 0.858
ANI92554.1
Putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
     
 0.850
ANI91960.1
Oligo-1,6-glucosidase.
   
 0.748
ANI93345.1
Oligo-1,6-glucosidase.
   
 0.748
ANI92340.1
Hypothetical protein.
 
     0.707
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.681
ANI92558.1
ATP-dependent RNA helicase HrpA.
     
 0.545
ANI91029.1
Putative ankyrin repeat protein.
   
 0.481
ANI91437.1
Uncharacterized protein.
   
 0.481
Your Current Organism:
Dietzia timorensis
NCBI taxonomy Id: 499555
Other names: BTCC B-560, D. timorensis, Dietzia timorensis Yamamura et al. 2010, NBRC 104184, strain ID05-A0528
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