Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ANI90986.1 | ANI93835.1 | BJL86_0175 | BJL86_3076 | Glutamate synthase [NADPH] large chain. | UvrABC system protein A. | 0.570 |
ANI90986.1 | polA | BJL86_0175 | BJL86_1454 | Glutamate synthase [NADPH] large chain. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.749 |
ANI90986.1 | recA | BJL86_0175 | BJL86_1800 | Glutamate synthase [NADPH] large chain. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.742 |
ANI91852.1 | ANI92136.1 | BJL86_1059 | BJL86_1354 | ATP-dependent DNA helicase UvrD2. | Uncharacterized protein. | 0.875 |
ANI91852.1 | ANI93072.1 | BJL86_1059 | BJL86_2308 | ATP-dependent DNA helicase UvrD2. | ATP-dependent DNA helicase UvrD1. | 0.959 |
ANI91852.1 | ANI93835.1 | BJL86_1059 | BJL86_3076 | ATP-dependent DNA helicase UvrD2. | UvrABC system protein A. | 0.608 |
ANI91852.1 | polA | BJL86_1059 | BJL86_1454 | ATP-dependent DNA helicase UvrD2. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.992 |
ANI91852.1 | recA | BJL86_1059 | BJL86_1800 | ATP-dependent DNA helicase UvrD2. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.993 |
ANI91852.1 | uvrB | BJL86_1059 | BJL86_1464 | ATP-dependent DNA helicase UvrD2. | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] | 0.715 |
ANI91852.1 | uvrC | BJL86_1059 | BJL86_1706 | ATP-dependent DNA helicase UvrD2. | UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.630 |
ANI92136.1 | ANI91852.1 | BJL86_1354 | BJL86_1059 | Uncharacterized protein. | ATP-dependent DNA helicase UvrD2. | 0.875 |
ANI92136.1 | ANI93072.1 | BJL86_1354 | BJL86_2308 | Uncharacterized protein. | ATP-dependent DNA helicase UvrD1. | 0.593 |
ANI92136.1 | ANI93835.1 | BJL86_1354 | BJL86_3076 | Uncharacterized protein. | UvrABC system protein A. | 0.515 |
ANI92136.1 | mfd | BJL86_1354 | BJL86_2185 | Uncharacterized protein. | Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.515 |
ANI92136.1 | polA | BJL86_1354 | BJL86_1454 | Uncharacterized protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.874 |
ANI92136.1 | recA | BJL86_1354 | BJL86_1800 | Uncharacterized protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.514 |
ANI92136.1 | uvrB | BJL86_1354 | BJL86_1464 | Uncharacterized protein. | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] | 0.901 |
ANI93072.1 | ANI91852.1 | BJL86_2308 | BJL86_1059 | ATP-dependent DNA helicase UvrD1. | ATP-dependent DNA helicase UvrD2. | 0.959 |
ANI93072.1 | ANI92136.1 | BJL86_2308 | BJL86_1354 | ATP-dependent DNA helicase UvrD1. | Uncharacterized protein. | 0.593 |
ANI93072.1 | ANI93835.1 | BJL86_2308 | BJL86_3076 | ATP-dependent DNA helicase UvrD1. | UvrABC system protein A. | 0.640 |
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