STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANI94012.1Membrane protein YdfJ. (903 aa)    
Predicted Functional Partners:
ANI94011.1
Uncharacterized protein YhgE.
    0.906
ANI94013.1
Hypothetical protein.
  
    0.481
ANI92766.1
Hypothetical protein.
 
    0.470
ANI90960.1
Multidrug efflux protein YfmO.
  
   0.445
ANI90855.1
Serine/threonine-protein kinase PknB.
   
 
 0.404
ANI92145.1
Serine/threonine-protein kinase PknL.
   
 
 0.404
ANI92131.1
Menaquinol-cytochrome c reductase cytochrome b subunit.
  
   
 0.403
Your Current Organism:
Dietzia timorensis
NCBI taxonomy Id: 499555
Other names: BTCC B-560, D. timorensis, Dietzia timorensis Yamamura et al. 2010, NBRC 104184, strain ID05-A0528
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.