KWV96440.1 protein (Erythrobacter sp. AP23) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KWV96440.1

Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)

Predicted Functional Partners:

dnaE2

0.746

KWV95863.1

0.621

KWV96439.1

0.533

KWV95861.1

0.455

KWV94320.1

0.410

KWV94381.1

0.409

Your Current Organism:

Erythrobacter sp. AP23

NCBI taxonomy Id: 499656
Other names: E. sp. AP23

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KWV94320.1	KWV96440.1	ASS64_10940	ASS64_01130	6-O-methylguanine DNA methyltransferase; Regulates genes involved in the repair of alkylated DNA; repairs DNA containing 6-O-methylguanine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
KWV94381.1	KWV96440.1	ASS64_11290	ASS64_01130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
KWV95861.1	KWV96439.1	ASS64_01110	ASS64_01115	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
KWV95861.1	KWV96440.1	ASS64_01110	ASS64_01130	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
KWV95861.1	dnaE2	ASS64_01110	ASS64_01120	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	0.620
KWV95863.1	KWV96439.1	ASS64_01125	ASS64_01115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
KWV95863.1	KWV96440.1	ASS64_01125	ASS64_01130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
KWV95863.1	dnaE2	ASS64_01125	ASS64_01120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	0.758
KWV96439.1	KWV95861.1	ASS64_01115	ASS64_01110	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
KWV96439.1	KWV95863.1	ASS64_01115	ASS64_01125	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
KWV96439.1	KWV96440.1	ASS64_01115	ASS64_01130	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
KWV96439.1	dnaE2	ASS64_01115	ASS64_01120	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	0.734
KWV96440.1	KWV94320.1	ASS64_01130	ASS64_10940	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology.	6-O-methylguanine DNA methyltransferase; Regulates genes involved in the repair of alkylated DNA; repairs DNA containing 6-O-methylguanine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
KWV96440.1	KWV94381.1	ASS64_01130	ASS64_11290	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
KWV96440.1	KWV95861.1	ASS64_01130	ASS64_01110	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
KWV96440.1	KWV95863.1	ASS64_01130	ASS64_01125	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
KWV96440.1	KWV96439.1	ASS64_01130	ASS64_01115	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
KWV96440.1	dnaE2	ASS64_01130	ASS64_01120	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	0.746
dnaE2	KWV95861.1	ASS64_01120	ASS64_01110	DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
dnaE2	KWV95863.1	ASS64_01120	ASS64_01125	DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758