Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
KWV95335.1Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)    
Predicted Functional Partners:
KWV93998.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.842
KWV93880.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.818
KWV94122.1
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.783
KWV94520.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.741
KWV94993.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.733
KWV93879.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.724
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
     
 0.713
KWV96324.1
Autotransporter outer membrane beta-barrel domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.667
KWV95537.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.667
KWV96265.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.644
Your Current Organism:
Erythrobacter sp. AP23
NCBI taxonomy Id: 499656
Other names: E. sp. AP23
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