Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
KWV94750.1Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)    
Predicted Functional Partners:
KWV94748.1
Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.990
KWV94590.1
Protein TolQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.945
KWV94749.1
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.916
KWV94747.1
Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
  0.899
KWV95341.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.746
KWV94785.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.690
KWV94592.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.679
KWV93642.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.679
ASS64_12375
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.679
KWV95046.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.657
Your Current Organism:
Erythrobacter sp. AP23
NCBI taxonomy Id: 499656
Other names: E. sp. AP23
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