Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KWV95055.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa)    
Predicted Functional Partners:
KWV95674.1
Cytochrome c oxidase accessory protein CcoG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.874
KWV94984.1
Polyphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.855
KWV95673.1
Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.583
KWV94056.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
KWV95669.1
Cytochrome C oxidase Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.561
KWV95667.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.545
KWV95053.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.535
KWV95054.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.535
KWV95056.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.529
KWV95671.1
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
   
    0.502
Your Current Organism:
Erythrobacter sp. AP23
NCBI taxonomy Id: 499656
Other names: E. sp. AP23
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