Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
KWV94158.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 0.949
bamD
Transporter; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 0.949
KWV94157.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.931
KWV94072.1
Cell envelope protein SmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.799
KWV95668.1
Cytochrome C oxidase Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
     
 0.671
KWV94159.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.630
KWV94576.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.614
KWV95172.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.593
KWV92590.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.593
KWV94662.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.590
Your Current Organism:
Erythrobacter sp. AP23
NCBI taxonomy Id: 499656
Other names: E. sp. AP23
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