KWV93933.1 protein (Erythrobacter sp. AP23) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KWV93933.1

DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (748 aa)

Predicted Functional Partners:

KWV93934.1

0.628

KWV93935.1

0.628

KWV93937.1

0.567

KWV93936.1

0.516

KWV95163.1

0.436

KWV96498.1

0.435

KWV95602.1

0.419

Your Current Organism:

Erythrobacter sp. AP23

NCBI taxonomy Id: 499656
Other names: E. sp. AP23

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KWV93933.1	KWV93934.1	ASS64_13680	ASS64_13685	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
KWV93933.1	KWV93935.1	ASS64_13680	ASS64_13690	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
KWV93933.1	KWV93936.1	ASS64_13680	ASS64_13695	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
KWV93933.1	KWV93937.1	ASS64_13680	ASS64_13700	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
KWV93933.1	KWV95163.1	ASS64_13680	ASS64_06545	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
KWV93933.1	KWV95602.1	ASS64_13680	ASS64_15610	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
KWV93933.1	KWV96498.1	ASS64_13680	ASS64_04230	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
KWV93934.1	KWV93933.1	ASS64_13685	ASS64_13680	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
KWV93934.1	KWV93935.1	ASS64_13685	ASS64_13690	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
KWV93934.1	KWV93936.1	ASS64_13685	ASS64_13695	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
KWV93935.1	KWV93933.1	ASS64_13690	ASS64_13680	Tyrosine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
KWV93935.1	KWV93934.1	ASS64_13690	ASS64_13685	Tyrosine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
KWV93935.1	KWV93936.1	ASS64_13690	ASS64_13695	Tyrosine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
KWV93936.1	KWV93933.1	ASS64_13695	ASS64_13680	Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
KWV93936.1	KWV93934.1	ASS64_13695	ASS64_13685	Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
KWV93936.1	KWV93935.1	ASS64_13695	ASS64_13690	Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
KWV93936.1	KWV93937.1	ASS64_13695	ASS64_13700	Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
KWV93937.1	KWV93933.1	ASS64_13700	ASS64_13680	Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
KWV93937.1	KWV93936.1	ASS64_13700	ASS64_13695	Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
KWV95163.1	KWV93933.1	ASS64_06545	ASS64_13680	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436