STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1UFT1Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (431 aa)    
Predicted Functional Partners:
A0A1Y1U6Z6
Tr-type G domain-containing protein.
   
 
 0.991
A0A1Y1UEI4
WD40-repeat-containing domain protein.
    
 
 0.923
A0A1Y1UIN4
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
 
 0.911
A0A1Y1UQ17
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
 
 0.911
A0A1Y1UH28
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.903
A0A1Y1U7V5
Putative ribosomal protein S20.
    
 
 0.899
A0A1Y1UQ25
Ribosomal protein S17e.
    
 
 0.898
A0A1Y1UP80
60S ribosomal protein L33-A-like protein.
   
   0.896
A0A1Y1UT48
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 
 0.896
A0A1Y1UMS7
Plectin/S10 domain-domain-containing protein.
    
 
 0.895
Your Current Organism:
Kockovaella imperatae
NCBI taxonomy Id: 4999
Other names: CBS 7554, IFO 10522, IGC 5360, JCM 7826, K. imperatae
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