A0A1Y1UI02 protein (Kockovaella imperatae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1UI02

Putative 60S ribosomal protein l30-1. (112 aa)

Predicted Functional Partners:

A0A1Y1U5T7

0.999

A0A1Y1U717

0.999

A0A1Y1U7I4

0.999

A0A1Y1U7N1

0.999

A0A1Y1U7U0

0.999

A0A1Y1U7V5

0.999

A0A1Y1U906

0.999

A0A1Y1U915

0.999

A0A1Y1U921

0.999

A0A1Y1U933

0.999

Your Current Organism:

Kockovaella imperatae

NCBI taxonomy Id: 4999
Other names: CBS 7554, IFO 10522, IGC 5360, JCM 7826, K. imperatae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1U5T7	A0A1Y1U717	Ribosomal L28e protein family-domain-containing protein.	Translation protein SH3-like domain-containing protein.	0.999
A0A1Y1U5T7	A0A1Y1U7I4	Ribosomal L28e protein family-domain-containing protein.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.998
A0A1Y1U5T7	A0A1Y1U7N1	Ribosomal L28e protein family-domain-containing protein.	Putative 60S ribosomal protein L4.	0.999
A0A1Y1U5T7	A0A1Y1U7U0	Ribosomal L28e protein family-domain-containing protein.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
A0A1Y1U5T7	A0A1Y1U7V5	Ribosomal L28e protein family-domain-containing protein.	Putative ribosomal protein S20.	0.999
A0A1Y1U5T7	A0A1Y1U906	Ribosomal L28e protein family-domain-containing protein.	Ribosomal protein L14-domain-containing protein.	0.999
A0A1Y1U5T7	A0A1Y1U915	Ribosomal L28e protein family-domain-containing protein.	Ribosomal protein S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
A0A1Y1U5T7	A0A1Y1U921	Ribosomal L28e protein family-domain-containing protein.	Putative large subunit ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A1Y1U5T7	A0A1Y1U933	Ribosomal L28e protein family-domain-containing protein.	60s ribosomal protein l23; Belongs to the universal ribosomal protein uL14 family.	0.999
A0A1Y1U5T7	A0A1Y1UI02	Ribosomal L28e protein family-domain-containing protein.	Putative 60S ribosomal protein l30-1.	0.999
A0A1Y1U717	A0A1Y1U5T7	Translation protein SH3-like domain-containing protein.	Ribosomal L28e protein family-domain-containing protein.	0.999
A0A1Y1U717	A0A1Y1U7I4	Translation protein SH3-like domain-containing protein.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
A0A1Y1U717	A0A1Y1U7N1	Translation protein SH3-like domain-containing protein.	Putative 60S ribosomal protein L4.	0.999
A0A1Y1U717	A0A1Y1U7U0	Translation protein SH3-like domain-containing protein.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
A0A1Y1U717	A0A1Y1U7V5	Translation protein SH3-like domain-containing protein.	Putative ribosomal protein S20.	0.999
A0A1Y1U717	A0A1Y1U906	Translation protein SH3-like domain-containing protein.	Ribosomal protein L14-domain-containing protein.	0.999
A0A1Y1U717	A0A1Y1U915	Translation protein SH3-like domain-containing protein.	Ribosomal protein S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
A0A1Y1U717	A0A1Y1U921	Translation protein SH3-like domain-containing protein.	Putative large subunit ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A1Y1U717	A0A1Y1U933	Translation protein SH3-like domain-containing protein.	60s ribosomal protein l23; Belongs to the universal ribosomal protein uL14 family.	0.999
A0A1Y1U717	A0A1Y1UI02	Translation protein SH3-like domain-containing protein.	Putative 60S ribosomal protein l30-1.	0.999