STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000719135_02220Unannotated protein. (155 aa)    
Predicted Functional Partners:
GCA_000719135_05435
Unannotated protein.
  
   
 0.783
GCA_000719135_02221
Unannotated protein.
  
    0.774
GCA_000719135_05436
Unannotated protein.
  
   
 0.771
GCA_000719135_02824
Unannotated protein.
  
   
 0.752
GCA_000719135_03301
Unannotated protein.
  
   
 0.710
GCA_000719135_04657
Unannotated protein.
  
 0.674
GCA_000719135_04318
Unannotated protein.
  
   
 0.663
GCA_000719135_00322
Unannotated protein.
  
     0.657
GCA_000719135_05064
Unannotated protein.
  
   
 0.629
GCA_000719135_00593
Unannotated protein.
  
   
 0.623
Your Current Organism:
Streptomyces avicenniae
NCBI taxonomy Id: 500153
Other names: CGMCC 4.5510, DSM 41943, JCM 16801, MCCC 1A01535, S. avicenniae, Streptomyces avicenniae Xiao et al. 2009, Streptomyces sp. 9-9, strain 9-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.