STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000719135_04786Unannotated protein. (434 aa)    
Predicted Functional Partners:
GCA_000719135_04785
Unannotated protein.
       0.838
GCA_000719135_00546
Unannotated protein.
   
 
  0.652
GCA_000719135_02382
Unannotated protein.
 
     0.648
GCA_000719135_04787
Unannotated protein.
       0.553
GCA_000719135_04412
Unannotated protein.
    
 0.523
GCA_000719135_03664
Unannotated protein.
     
 0.464
GCA_000719135_02936
Unannotated protein.
    
  0.442
GCA_000719135_03433
Unannotated protein.
    
  0.442
GCA_000719135_04381
Unannotated protein.
    
  0.442
GCA_000719135_01613
Unannotated protein.
  
     0.420
Your Current Organism:
Streptomyces avicenniae
NCBI taxonomy Id: 500153
Other names: CGMCC 4.5510, DSM 41943, JCM 16801, MCCC 1A01535, S. avicenniae, Streptomyces avicenniae Xiao et al. 2009, Streptomyces sp. 9-9, strain 9-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.