Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PAN3 | Pc04g00100 | B6HAH9 | B6GVT7 | PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] | Pc04g00100 protein. | 0.695 |
Pc04g00100 | PAN3 | B6GVT7 | B6HAH9 | Pc04g00100 protein. | PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] | 0.695 |
Pc04g00100 | Pc12g16160 | B6GVT7 | B6GYP6 | Pc04g00100 protein. | Pc12g16160 protein. | 0.467 |
Pc04g00100 | Pc16g09710 | B6GVT7 | B6H8K8 | Pc04g00100 protein. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.531 |
Pc04g00100 | Pc16g09720 | B6GVT7 | B6H8K9 | Pc04g00100 protein. | Pc16g09720 protein. | 0.531 |
Pc04g00100 | Pc16g12050 | B6GVT7 | B6H9U1 | Pc04g00100 protein. | Pc16g12050 protein. | 0.451 |
Pc04g00100 | Pc20g00690 | B6GVT7 | B6HG16 | Pc04g00100 protein. | 25S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family. | 0.451 |
Pc04g00100 | Pc22g08040 | B6GVT7 | B6HRU9 | Pc04g00100 protein. | rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. | 0.409 |
Pc04g00100 | Pc22g24460 | B6GVT7 | B6HQV5 | Pc04g00100 protein. | Pc22g24460 protein. | 0.483 |
Pc12g16160 | Pc04g00100 | B6GYP6 | B6GVT7 | Pc12g16160 protein. | Pc04g00100 protein. | 0.467 |
Pc12g16160 | Pc16g12050 | B6GYP6 | B6H9U1 | Pc12g16160 protein. | Pc16g12050 protein. | 0.595 |
Pc12g16160 | Pc20g00690 | B6GYP6 | B6HG16 | Pc12g16160 protein. | 25S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family. | 0.595 |
Pc12g16160 | Pc22g08040 | B6GYP6 | B6HRU9 | Pc12g16160 protein. | rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. | 0.773 |
Pc16g09710 | Pc04g00100 | B6H8K8 | B6GVT7 | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | Pc04g00100 protein. | 0.531 |
Pc16g09710 | Pc16g09720 | B6H8K8 | B6H8K9 | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | Pc16g09720 protein. | 0.886 |
Pc16g09720 | Pc04g00100 | B6H8K9 | B6GVT7 | Pc16g09720 protein. | Pc04g00100 protein. | 0.531 |
Pc16g09720 | Pc16g09710 | B6H8K9 | B6H8K8 | Pc16g09720 protein. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.886 |
Pc16g12050 | Pc04g00100 | B6H9U1 | B6GVT7 | Pc16g12050 protein. | Pc04g00100 protein. | 0.451 |
Pc16g12050 | Pc12g16160 | B6H9U1 | B6GYP6 | Pc16g12050 protein. | Pc12g16160 protein. | 0.595 |
Pc16g12050 | Pc22g08040 | B6H9U1 | B6HRU9 | Pc16g12050 protein. | rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. | 0.607 |
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