STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pc12g10510Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (123 aa)    
Predicted Functional Partners:
Pc20g01340
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
Pc20g10480
Small nuclear ribonucleoprotein G.
   
 0.999
Pc21g02990
Pc21g02990 protein.
   
 0.999
Pc21g08660
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
Pc22g12590
Small nuclear ribonucleoprotein Sm D3.
   
0.999
Pc13g07180
Pc13g07180 protein.
   
 0.998
Pc21g11050
Pc21g11050 protein.
   
 0.997
Pc21g03370
Pc21g03370 protein.
   
 0.997
Pc22g10150
Pc22g10150 protein.
   
 0.997
Pc18g04100
Pc18g04100 protein.
   
 0.996
Your Current Organism:
Penicillium rubens
NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.