STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srePGATA transcription factor sreP-Penicillium chrysogenum. (532 aa)    
Predicted Functional Partners:
Pc13g11420
Pc13g11420 protein.
   
  
 0.769
Pc21g16620
Pc21g16620 protein.
    
 
 0.746
Pc22g13920
Pc22g13920 protein.
      
 0.737
Pc12g00040
Pc12g00040 protein.
    
 
 0.734
Pc13g03170
Pc13g03170 protein.
    
 0.724
Pc14g01630
Pc14g01630 protein.
    
 
 0.712
Pc13g10670
Pc13g10670 protein.
   
 0.690
Pc12g04670
Pc12g04670 protein.
    
 
 0.688
Pc12g10840
Pc12g10840 protein.
    
 0.662
Pc21g08030
Pc21g08030 protein.
    
 
 0.662
Your Current Organism:
Penicillium rubens
NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.