Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pc12g10510 | Pc18g04100 | B6H0Q9 | B6HBH4 | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | Pc18g04100 protein. | 0.996 |
Pc12g10510 | Pc20g01340 | B6H0Q9 | B6HD71 | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.999 |
Pc12g10510 | Pc20g10480 | B6H0Q9 | B6HFU3 | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | Small nuclear ribonucleoprotein G. | 0.999 |
Pc12g10510 | Pc21g02980 | B6H0Q9 | B6HKP6 | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | Pc21g02980 protein. | 0.968 |
Pc12g10510 | Pc21g08660 | B6H0Q9 | B6HMC4 | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | Small nuclear ribonucleoprotein Sm D2. | 0.999 |
Pc12g10510 | Pc21g11050 | B6H0Q9 | B6HJS4 | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | Pc21g11050 protein. | 0.997 |
Pc12g10510 | Pc21g19500 | B6H0Q9 | B6HJJ0 | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | Pc21g19500 protein. | 0.967 |
Pc12g10510 | Pc22g03450 | B6H0Q9 | B6HRD4 | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.994 |
Pc12g10510 | Pc22g10150 | B6H0Q9 | B6HV95 | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | Pc22g10150 protein. | 0.997 |
Pc12g10510 | Pc22g12590 | B6H0Q9 | B6HRX7 | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | Small nuclear ribonucleoprotein Sm D3. | 0.999 |
Pc18g04100 | Pc12g10510 | B6HBH4 | B6H0Q9 | Pc18g04100 protein. | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | 0.996 |
Pc18g04100 | Pc20g01340 | B6HBH4 | B6HD71 | Pc18g04100 protein. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.995 |
Pc18g04100 | Pc20g10480 | B6HBH4 | B6HFU3 | Pc18g04100 protein. | Small nuclear ribonucleoprotein G. | 0.996 |
Pc18g04100 | Pc21g02980 | B6HBH4 | B6HKP6 | Pc18g04100 protein. | Pc21g02980 protein. | 0.887 |
Pc18g04100 | Pc21g08660 | B6HBH4 | B6HMC4 | Pc18g04100 protein. | Small nuclear ribonucleoprotein Sm D2. | 0.995 |
Pc18g04100 | Pc21g11050 | B6HBH4 | B6HJS4 | Pc18g04100 protein. | Pc21g11050 protein. | 0.991 |
Pc18g04100 | Pc21g19500 | B6HBH4 | B6HJJ0 | Pc18g04100 protein. | Pc21g19500 protein. | 0.874 |
Pc18g04100 | Pc22g03450 | B6HBH4 | B6HRD4 | Pc18g04100 protein. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.756 |
Pc18g04100 | Pc22g10150 | B6HBH4 | B6HV95 | Pc18g04100 protein. | Pc22g10150 protein. | 0.999 |
Pc18g04100 | Pc22g12590 | B6HBH4 | B6HRX7 | Pc18g04100 protein. | Small nuclear ribonucleoprotein Sm D3. | 0.996 |
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