STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pc22g11050Pc22g11050 protein. (580 aa)    
Predicted Functional Partners:
Pc12g12160
Pc12g12160 protein.
   
 0.999
Pc12g04780
Pc12g04780 protein.
   
 0.999
Pc18g02030
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.999
Pc21g19500
Pc21g19500 protein.
    
 0.999
Pc22g01070
Pc22g01070 protein.
   
 0.999
Pc22g08360
Pc22g08360 protein.
    
 0.998
Pc21g15190
Pc21g15190 protein.
   
 0.997
Pc21g11050
Pc21g11050 protein.
   
 0.996
Pc22g04980
Pc22g04980 protein.
   
 0.996
Pc12g10510
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.995
Your Current Organism:
Penicillium rubens
NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.