Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFE13725.1 | SFE13758.1 | SAMN02799615_00467 | SAMN02799615_00468 | Biopolymer transport protein ExbD. | Biopolymer transport protein ExbB. | 0.988 |
SFE13725.1 | SFE13795.1 | SAMN02799615_00467 | SAMN02799615_00469 | Biopolymer transport protein ExbD. | Competence protein ComEC. | 0.739 |
SFE13725.1 | lpxK | SAMN02799615_00467 | SAMN02799615_00465 | Biopolymer transport protein ExbD. | lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.829 |
SFE13725.1 | msbA | SAMN02799615_00467 | SAMN02799615_00466 | Biopolymer transport protein ExbD. | ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.788 |
SFE13758.1 | SFE13725.1 | SAMN02799615_00468 | SAMN02799615_00467 | Biopolymer transport protein ExbB. | Biopolymer transport protein ExbD. | 0.988 |
SFE13758.1 | SFE13795.1 | SAMN02799615_00468 | SAMN02799615_00469 | Biopolymer transport protein ExbB. | Competence protein ComEC. | 0.739 |
SFE13758.1 | lpxK | SAMN02799615_00468 | SAMN02799615_00465 | Biopolymer transport protein ExbB. | lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.857 |
SFE13758.1 | msbA | SAMN02799615_00468 | SAMN02799615_00466 | Biopolymer transport protein ExbB. | ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.813 |
SFE13795.1 | SFE13725.1 | SAMN02799615_00469 | SAMN02799615_00467 | Competence protein ComEC. | Biopolymer transport protein ExbD. | 0.739 |
SFE13795.1 | SFE13758.1 | SAMN02799615_00469 | SAMN02799615_00468 | Competence protein ComEC. | Biopolymer transport protein ExbB. | 0.739 |
SFE13795.1 | SFE91359.1 | SAMN02799615_00469 | SAMN02799615_01926 | Competence protein ComEC. | DNA processing protein. | 0.869 |
SFE13795.1 | SFE95756.1 | SAMN02799615_00469 | SAMN02799615_02077 | Competence protein ComEC. | General secretion pathway protein F. | 0.725 |
SFE13795.1 | SFF19231.1 | SAMN02799615_00469 | SAMN02799615_02726 | Competence protein ComEC. | DNA repair protein RadC; Belongs to the UPF0758 family. | 0.676 |
SFE13795.1 | SFF42313.1 | SAMN02799615_00469 | SAMN02799615_03509 | Competence protein ComEC. | Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.754 |
SFE13795.1 | SFF42331.1 | SAMN02799615_00469 | SAMN02799615_03510 | Competence protein ComEC. | Type IV pilus assembly protein PilC. | 0.725 |
SFE13795.1 | SFF51823.1 | SAMN02799615_00469 | SAMN02799615_03949 | Competence protein ComEC. | comF family protein. | 0.878 |
SFE13795.1 | lpxK | SAMN02799615_00469 | SAMN02799615_00465 | Competence protein ComEC. | lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.761 |
SFE13795.1 | msbA | SAMN02799615_00469 | SAMN02799615_00466 | Competence protein ComEC. | ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.734 |
SFE91359.1 | SFE13795.1 | SAMN02799615_01926 | SAMN02799615_00469 | DNA processing protein. | Competence protein ComEC. | 0.869 |
SFE91359.1 | SFE95756.1 | SAMN02799615_01926 | SAMN02799615_02077 | DNA processing protein. | General secretion pathway protein F. | 0.430 |
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