STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE46068.1Uncharacterized conserved protein YndB, AHSA1/START domain. (154 aa)    
Predicted Functional Partners:
SFE46113.1
Hypothetical protein.
       0.526
SFE17319.1
DoxX-like family protein.
 
     0.525
SFE10434.1
Catechol 2,3-dioxygenase.
  
     0.481
SFE46149.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.479
SFE17585.1
Dihydrofolate reductase.
 
     0.474
SFE46204.1
Two-component system, OmpR family, sensor histidine kinase QseC.
       0.468
SFE64526.1
Helix-turn-helix domain-containing protein.
 
    0.437
SFE10759.1
Dihydrofolate reductase.
 
     0.418
SFF55066.1
Dihydrofolate reductase.
 
     0.415
Your Current Organism:
Dyella marensis
NCBI taxonomy Id: 500610
Other names: D. marensis, Dyella marensis Lee and Lee 2009, JCM 14959, KCTC 22144, strain CS5-B2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.