STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE46546.12-dehydro-3-deoxyphosphogalactonate aldolase. (219 aa)    
Predicted Functional Partners:
SFE46505.1
2-dehydro-3-deoxygalactonokinase.
 
  
 0.987
SFE46581.1
Galactonate dehydratase.
 
  
 0.952
SFE46663.1
L-arabinonolactonase.
 
   
 0.890
SFE98585.1
2-dehydro-3-deoxygluconokinase.
 
 
 0.880
SFE46618.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.857
SFE46465.1
DNA-binding transcriptional regulator, FadR family.
 
   
 0.848
edd
6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
 
 0.842
SFF08801.1
2-oxoisovalerate dehydrogenase E1 component.
     
 0.794
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
  
 0.780
SFF13412.1
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.775
Your Current Organism:
Dyella marensis
NCBI taxonomy Id: 500610
Other names: D. marensis, Dyella marensis Lee and Lee 2009, JCM 14959, KCTC 22144, strain CS5-B2
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