STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE98559.1D-serine dehydratase. (426 aa)    
Predicted Functional Partners:
SFE98524.1
N-acyl-D-amino-acid deacylase.
 
   
 0.896
SFE98585.1
2-dehydro-3-deoxygluconokinase.
 
     0.854
SFE98497.1
Reactive intermediate/imine deaminase.
 
     0.783
SFE84588.1
Gluconate 2-dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.676
SFF57756.1
Lactoylglutathione lyase.
   
 
  0.675
SFF15525.1
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
   
 
  0.670
SFE10434.1
Catechol 2,3-dioxygenase.
   
 
  0.664
SFF54252.1
Threonine synthase.
    
  0.621
SFE98468.1
gluconate:H+ symporter, GntP family.
 
    0.572
SFE63333.1
Selenocysteine lyase/Cysteine desulfurase.
    
  0.561
Your Current Organism:
Dyella marensis
NCBI taxonomy Id: 500610
Other names: D. marensis, Dyella marensis Lee and Lee 2009, JCM 14959, KCTC 22144, strain CS5-B2
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