STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrxAThioredoxin; KEGG: eci:UTI89_C4335 1.3e-12 trxA; thioredoxin 1 K03671; Psort location: Cytoplasmic, score: 8.87; Belongs to the thioredoxin family. (111 aa)    
Predicted Functional Partners:
trxB
KEGG: tte:TTE1881 3.0e-91 trxB; thioredoxin reductase K00384; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.930
EEA85941.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: ctc:CTC02552 5.0e-98 thioredoxin reductase K00384; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.801
grdE
Glycine reductase, subunit ABC; KEGG: tte:TTE1879 5.2e-167 GrdE proprotein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.780
GrdA1_1
KEGG: tde:TDE0745 6.4e-34 grdA; glycine reductase complex selenoprotein GrdA.
 
   
 0.766
groL
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
 
 0.713
YfkJ
Low molecular weight phosphotyrosine protein phosphatase; KEGG: lac:LBA0722 7.5e-24 protein-tyrosine phosphatase K01104; Psort location: Cytoplasmic, score: 8.87; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 
 0.700
plsX
KEGG: tte:TTE1874 8.1e-114 plsX2; fatty acid/phospholipid biosynthesis enzyme; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.687
Udk_2
Phosphoribulokinase/uridine kinase family protein; KEGG: tte:TTE1778 3.4e-122 udk; uridine kinase K00876; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.677
grdB
KEGG: chy:CHY_2393 2.7e-122 grdB; glycine reductase, selenoprotein B; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.671
TrxB_1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: mta:Moth_2420 2.9e-54 thioredoxin reductase K00384; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.660
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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