STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FldC_22-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: eci:UTI89_C5045 1.5e-103 yjiM; hypothetical protein YjiM K04111; Psort location: Cytoplasmic, score: 8.87. (399 aa)    
Predicted Functional Partners:
HadI_1
Putative CoA-substrate-specific enzyme activase; KEGG: eci:UTI89_C5044 1.5e-57 yjiL; hypothetical protein YjiL K04111; Psort location: CytoplasmicMembrane, score: 9.75.
 
 0.996
HadI_2
Putative CoA-substrate-specific enzyme activase; KEGG: rpa:RPA0659 5.5e-17 badF; benzoyl-CoA reductase subunit K04114.
  
 
 0.667
yedF
Selenium metabolism protein YedF; Psort location: Cytoplasmic, score: 8.87; Belongs to the sulfur carrier protein TusA family.
 
    0.567
EEA84241.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.556
EEA86139.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
    0.481
LytC_28
Putative cell wall binding repeat 2; KEGG: bli:BL03348 7.7e-30 lytC; N-acetylmuramoyl-L-alanine amidase (major autolysin) (CWBP49) K01448; Psort location: Cellwall, score: 9.17.
       0.469
Csd
Cysteine desulfurase family protein; KEGG: cpe:CPE2647 2.7e-90 nifS; probable aminotransferase required for NAD biosynthesis; Psort location: Cytoplasmic, score: 8.87.
 
     0.407
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.