STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DctDYcbB domain protein; KEGG: gka:GK3387 1.4e-10 spo0F; stage 0 sporulation protein F (two-component response regulator, sporulation initiation phosphotransferase F) K02490; Psort location: Cytoplasmic, score: 9.98. (279 aa)    
Predicted Functional Partners:
GlnK
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: sak:SAK_2066 7.0e-44 sensor histidine kinase, putative K07717; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.996
EEA85892.1
Hypothetical protein; KEGG: hit:NTHI0573 1.5e-09 fruA; PTS system, fructose-specific IIBC component K02769; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.723
BetI
Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.661
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.518
EEA84143.1
Cyclic nucleotide-binding domain protein.
  
 
 0.503
EEA85920.1
Hypothetical protein; KEGG: sab:SAB1181c 0.0018 probable membrane protein K01620; Psort location: CytoplasmicMembrane, score: 9.99.
    
 
 0.466
EEA85026.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
    
 
 0.466
PhoR_1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: spb:M28_Spy0661 1.5e-59 two component system histidine kinase; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.440
EEA85939.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bce:BC0573 4.7e-54 two component system histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
  
 
 0.440
PhoR_3
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: spj:MGAS2096_Spy1107 4.2e-46 two-component system histidine kinase; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.440
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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