STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YitUKEGG: sak:SAK_0393 7.6e-24 Cof-like hydrolase/peptidyl-prolyl cis-trans isomerase domain protein; Psort location: Cytoplasmic, score: 8.87. (258 aa)    
Predicted Functional Partners:
PpiB
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
 
    0.866
MenH_1
Hydrolase, alpha/beta hydrolase fold family protein; KEGG: fnu:FN1062 2.1e-13 hydrolase.
  
    0.501
YbiT_2
ABC transporter, ATP-binding protein; KEGG: eci:UTI89_C0824 1.7e-35 ybiT; hypothetical ABC transporter ATP-binding protein YbiT K01957; Psort location: CytoplasmicMembrane, score: 9.49.
  
    0.442
TreP
PTS system sucrose-specific IIBC component; KEGG: lpl:lp_0185 1.0e-152 pts1BCA; sucrose PTS, EIIBCA K02808:K02809:K02810; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.400
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.