STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LytC_25Putative cell wall binding repeat 2; KEGG: ctc:CTC02092 1.4e-36 N-acetylmuramoyl-L-alanine amidase K01448; Psort location: Cellwall, score: 9.17. (487 aa)    
Predicted Functional Partners:
EEA85019.1
Efflux transporter, RND family, MFP subunit; KEGG: cal:orf19.2410 0.0076 IMH1; involved in vesicular transport K01553.
 
    0.661
TarF
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sab:SAB0193 1.2e-16 teichoic acid biosynthesis protein F.
  
     0.620
FtsN
Sporulation and cell division repeat protein; KEGG: mpe:MYPE6470 1.9e-17 parC; DNA topoisomerase IV subunit A K02621; Psort location: Cytoplasmic, score: 8.87.
  
    0.611
ErpA
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.558
EEA86054.1
KEGG: cpr:CPR_1483 1.8e-15 N-acetylmuramoyl-L-alanine amidase domain protein K01446.
  
    0.466
EEA84849.1
KEGG: baa:BA_2942 7.6e-15 amidase_3, N-acetylmuramoyl-L-alanine amidase K01448.
  
    0.444
EEA85817.1
Fibronectin type III domain protein; KEGG: pfa:MAL13P1.278 1.5e-11 Ser/Thr protein kinase K00870.
  
    0.439
EEA85958.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.431
EEA84633.1
Hypothetical protein; Belongs to the 5'(3')-deoxyribonucleotidase family.
  
     0.430
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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