STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YvcJHypothetical protein; Displays ATPase and GTPase activities. (287 aa)    
Predicted Functional Partners:
EEA85688.1
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
  
 0.942
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
 0.904
PolX
PHP domain protein; KEGG: eci:UTI89_C1155 9.8e-15 ycdX; hypothetical protein K04477; Psort location: Cytoplasmic, score: 8.87.
       0.807
Rng
S1 RNA binding domain protein; KEGG: tte:TTE0911 7.0e-76 cafA; Ribonucleases G and E; Psort location: Cytoplasmic, score: 9.98.
   
 
 0.778
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
     
 0.774
Ndx1_1
Hydrolase, NUDIX family; KEGG: aae:aq_158 3.0e-20 apfA; AP4A hydrolase K03574; Belongs to the Nudix hydrolase family.
  
    0.722
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.617
hpf
Hypothetical protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
 
  
 0.458
raiA
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
 
  
 0.437
GuaB_2
Putative inosine-5'-monophosphate dehydrogenase; KEGG: lin:lin0179 7.6e-221 similar to inosine monophosphate dehydrogenase K00088; Psort location: Cytoplasmic, score: 8.87.
     
 0.408
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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