STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobJKEGG: lmf:LMOf2365_1208 2.9e-86 cobJ; precorrin-3B C17-methyltransferase K03395; Psort location: Cytoplasmic, score: 8.87. (241 aa)    
Predicted Functional Partners:
cobM
Precorrin-4 C(11)-methyltransferase; KEGG: lin:lin1160 9.3e-97 cbiF; similar to precorrin-3 methylase K03396; Psort location: Cytoplasmic, score: 8.87.
 
 0.999
CbiG
CbiG; KEGG: bfs:BF2549 2.3e-27 putative bifunctional CbiF/CbiG cobalamin biosynthesis protein K03396:K02189; Psort location: Cytoplasmic, score: 8.87.
  
 0.999
cobK
precorrin-6A reductase; KEGG: lmo:lmo1200 2.3e-45 similar to cobalamin biosynthesis J protein CbiJ K03397; Psort location: Cytoplasmic, score: 8.87.
  
 0.999
cobI
KEGG: lmo:lmo1203 1.1e-59 cbiL; precorrin-2 C20-methyltransferase K03394; Belongs to the precorrin methyltransferase family.
  
0.998
cbiC
KEGG: lmo:lmo1193 2.0e-64 precorrin-8X methylmutase K03400; Psort location: Cytoplasmic, score: 8.87.
  
 0.997
cbiK
Cobalt chelatase (CbiK); KEGG: ctc:CTC00743 1.6e-67 cbiK; anaerobic cobalt chelatase cbiK K02190; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.991
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
 0.990
cbiT
precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: lin:lin1159 2.5e-41 similar to precorrin decarbocylase K02191; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.984
cobS
adenosylcobinamide-GDP ribazoletransferase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
  
  
 0.974
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
 
  
 0.963
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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