STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CggRPutative sugar-binding domain protein; KEGG: cpr:CPR_1160 1.6e-21 citrate lyase regulator, putative K00863; Psort location: Cytoplasmic, score: 8.87. (340 aa)    
Predicted Functional Partners:
gap-2
KEGG: cno:NT01CX_1404 2.4e-146 glyceraldehyde-3-phosphate dehydrogenase, type I K00155; Psort location: Cytoplasmic, score: 9.98.
  
  
 0.744
pgk
Phosphoglycerate kinase; KEGG: cno:NT01CX_1411 4.5e-168 phosphoglycerate kinase K00927; Psort location: Cytoplasmic, score: 9.98.
  
  
 0.602
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
  
 0.564
purR
KEGG: bca:BCE_0044 1.1e-59 purR; purine operon repressor; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.485
rpoN
RNA polymerase sigma-54 factor; KEGG: reh:H16_A0387 2.2e-63 rpoN; DNA-directed RNA polymerase sigma subunit (RpoN) K00960; Psort location: Cytoplasmic, score: 8.87.
 
     0.483
QueG_2
KEGG: bfr:BF4553 0.00025 fumarate reductase iron-sulfur cluster protein subunit K00240; Psort location: Cytoplasmic, score: 8.87.
  
     0.452
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.440
EEA84769.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.404
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ctc:CTC00378 1.4e-123 glyceraldehyde 3-phosphate dehydrogenase K00134; Psort location: Cytoplasmic, score: 9.98; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.403
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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