STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galEKEGG: bat:BAS5304 4.4e-122 UDP-glucose 4-epimerase K01784; Psort location: Cytoplasmic, score: 8.87; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (339 aa)    
Predicted Functional Partners:
GalT
Putative UTP--hexose-1-phosphate uridylyltransferase; KEGG: tma:TM0896 1.5e-41 galactose-1-phosphate uridylyltransferase K00964; Psort location: Cytoplasmic, score: 8.87.
  
 0.996
YwqF
Nucleotide sugar dehydrogenase; KEGG: cpe:CPE0494 1.4e-157 UDPglucose 6-dehydrogenase K00012; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.961
galU
KEGG: cpf:CPF_0487 2.6e-117 galU; UTP-glucose-1-phosphate uridylyltransferase K00963; Psort location: Cytoplasmic, score: 8.87.
   
 0.947
LytC_23
ErfK/YbiS/YcfS/YnhG; KEGG: bsu:BG10407 3.6e-37 lytC, cwlB; N-acetylmuramoyl-L-alanine amidase, major autolysin, peptidoglycan hydrolase, LytC amidase family K01448; Psort location: Cellwall, score: 9.17.
       0.693
TreP
PTS system sucrose-specific IIBC component; KEGG: lpl:lp_0185 1.0e-152 pts1BCA; sucrose PTS, EIIBCA K02808:K02809:K02810; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.599
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 
 0.505
PurR_1
Sugar-binding domain protein; KEGG: efa:EF1922 4.7e-13 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein K00852; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.495
EEA85305.1
Hypothetical protein; KEGG: pfa:PF14_0392 0.00098 Ser/Thr protein kinase, putative K00870; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.463
EEA85306.1
Hypothetical protein; KEGG: baf:BAPKO_0676 0.0036 recB; exodeoxyribonuclease V, beta chain K03582.
  
 
 0.462
EEA85303.1
HIRAN domain protein; KEGG: fnu:FN0522 0.0057 exonuclease SBCC K03546; Psort location: Cytoplasmic, score: 8.87.
  
    0.452
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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