STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
derRibosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (441 aa)    
Predicted Functional Partners:
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; KEGG: cac:CAC1712 2.8e-95 gpsA; glycerol 3-phosphate dehydrogenase K00057; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.985
cmk
Cytidylate kinase; KEGG: ctc:CTC01315 3.0e-52 cmk; cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.87.
  
 0.972
EEA85335.1
Putative FeS-containing Cyanobacterial-specific oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
 
    0.925
plsY
Acyl-phosphate glycerol 3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.770
RluB_1
Pseudouridylate synthase; KEGG: tte:TTE1332 6.7e-71 rsuA2; 16S rRNA uridine-516 pseudouridylate synthase and related Pseudouridylate synthase K06178; Psort location: Cytoplasmic, score: 8.87; Belongs to the pseudouridine synthase RsuA family.
 
  
 0.714
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
 
   
 0.670
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
    0.667
typA
GTP-binding protein TypA; KEGG: eci:UTI89_C4460 2.4e-169 typA, bipA, yihK, yjhK; putative GTP-binding factor K06207; Psort location: Cytoplasmic, score: 9.98.
  
  
 0.655
mraW
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
 
   
 0.623
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
 
  
 0.575
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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