STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEA85160.1Hypothetical protein; KEGG: pmu:PM1846 0.00040 ptsB; phosphotransferase system enzyme II, sucrose-specific, factor IIBC K02809:K02810; Psort location: CytoplasmicMembrane, score: 9.99. (739 aa)    
Predicted Functional Partners:
EEA85159.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the UPF0297 family.
       0.827
YrrK
RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.827
EEA85219.1
Putative thiamine diphosphokinase; KEGG: ctc:CTC01457 0.0095 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566; Psort location: Cytoplasmic, score: 8.87.
 
     0.783
EEA85220.1
Hypothetical protein; KEGG: fnu:FN0771 0.0095 oxygen-independent coproporphyrinogen III oxidase.
 
     0.783
GpgS
Glycosyltransferase, group 2 family protein; KEGG: mth:MTH374 1.1e-15 dolichyl-phosphate mannose synthase related protein K00721; Psort location: Cytoplasmic, score: 8.87.
 
    0.778
MraY_2
Hypothetical protein; KEGG: sha:SH2144 2.7e-08 llm; lipophilic protein affecting bacterial lysis rate and methicillin resistance level protein K02851; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.775
EEA85223.1
Hypothetical protein.
  
     0.775
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.715
EEA85107.1
Hypothetical protein.
  
 
  0.704
EEA85162.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the UPF0473 family.
 
     0.701
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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