STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YtrB_2KEGG: fal:FRAAL3746 1.3e-35 putative ABC transporter (ATP-binding protein); Psort location: CytoplasmicMembrane, score: 9.49. (290 aa)    
Predicted Functional Partners:
EEA85086.1
KEGG: btk:BT9727_3817 8.4e-09 transcriptional regulator, GntR family K07979; Psort location: Cytoplasmic, score: 8.87.
    0.941
EEA85088.1
Hypothetical protein; KEGG: rde:RD1_1463 0.0057 merA; mercuric reductase K00520; Psort location: CytoplasmicMembrane, score: 9.99.
       0.773
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.505
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.495
atpG
ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.487
YtrA_3
KEGG: bcz:BCZK3833 1.9e-09 transcriptional regulator, GntR family; Psort location: Cytoplasmic, score: 8.87.
 
    0.474
AtpC
ATP synthase, delta/epsilon subunit, beta-sandwich domain protein; KEGG: tte:TTE0638 1.5e-11 atpC; F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit) K02114; Psort location: Cytoplasmic, score: 8.87.
   
   0.463
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.