STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SpeAOrn/Lys/Arg decarboxylase, major domain protein; KEGG: cpr:CPR_0514 2.0e-85 Orn/Lys/Arg decarboxylase K01582; Psort location: Cytoplasmic, score: 8.87. (504 aa)    
Predicted Functional Partners:
Tmk
Hypothetical protein; KEGG: ctc:CTC00220 3.3e-69 thymidylate kinase K00943; Psort location: Cytoplasmic, score: 8.87.
 
    0.929
argH
KEGG: cno:NT01CX_0134 1.4e-159 argH; argininosuccinate lyase K01755; Psort location: Cytoplasmic, score: 8.87.
     
 0.823
EEA84671.1
PSP1 C-terminal domain protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.803
DnaX_2
Putative DNA polymerase III, delta' subunit; KEGG: tte:TTE0097 2.8e-40 holB; ATPase involved in DNA replication K02341; Psort location: Cytoplasmic, score: 8.87.
       0.792
MdeA
Aluminum resistance protein; KEGG: ava:Ava_4213 1.5e-96 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K01758; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.719
YfiC
Hypothetical protein; KEGG: ctc:CTC00225 3.2e-64 methyltransferase K00599.
  
    0.650
ChuR
Hypothetical protein; KEGG: mka:MK1086 2.6e-06 ferredoxin domain fused to pyruvate-formate lyase-activating enzyme K04069; Psort location: Cytoplasmic, score: 8.87.
 
     0.553
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.542
EEA85472.1
rSAM-modified six-cysteine peptide; Psort location: Extracellular, score: 8.82.
 
     0.464
speE
Putative spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
   
 0.453
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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