STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEA84671.1PSP1 C-terminal domain protein; Psort location: Cytoplasmic, score: 8.87. (290 aa)    
Predicted Functional Partners:
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.875
DnaX_2
Putative DNA polymerase III, delta' subunit; KEGG: tte:TTE0097 2.8e-40 holB; ATPase involved in DNA replication K02341; Psort location: Cytoplasmic, score: 8.87.
  
   0.851
Tmk
Hypothetical protein; KEGG: ctc:CTC00220 3.3e-69 thymidylate kinase K00943; Psort location: Cytoplasmic, score: 8.87.
  
    0.837
SpeA
Orn/Lys/Arg decarboxylase, major domain protein; KEGG: cpr:CPR_0514 2.0e-85 Orn/Lys/Arg decarboxylase K01582; Psort location: Cytoplasmic, score: 8.87.
  
    0.803
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
      0.775
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
      0.761
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
    0.759
YfiC
Hypothetical protein; KEGG: ctc:CTC00225 3.2e-64 methyltransferase K00599.
 
    0.716
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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