STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galUKEGG: cpf:CPF_0487 2.6e-117 galU; UTP-glucose-1-phosphate uridylyltransferase K00963; Psort location: Cytoplasmic, score: 8.87. (310 aa)    
Predicted Functional Partners:
YwqF
Nucleotide sugar dehydrogenase; KEGG: cpe:CPE0494 1.4e-157 UDPglucose 6-dehydrogenase K00012; Psort location: Cytoplasmic, score: 8.87.
  
 0.960
PgcA
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; KEGG: bce:BC4919 2.6e-156 phosphoglucomutase/phosphomannomutase K01835:K01840; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.948
galE
KEGG: bat:BAS5304 4.4e-122 UDP-glucose 4-epimerase K01784; Psort location: Cytoplasmic, score: 8.87; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
   
 0.947
GalT
Putative UTP--hexose-1-phosphate uridylyltransferase; KEGG: tma:TM0896 1.5e-41 galactose-1-phosphate uridylyltransferase K00964; Psort location: Cytoplasmic, score: 8.87.
     
 0.913
AlgC
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; KEGG: lmf:LMOf2365_1901 1.2e-137 phosphoglucomutase/phosphomannomutase family protein K01840; Psort location: Cytoplasmic, score: 8.87.
   
 0.707
PcrA
KEGG: cpr:CPR_2246 8.8e-188 pcrA; ATP-dependent DNA helicase PcrA K03657; Psort location: Cytoplasmic, score: 8.87.
      0.586
pgi
KEGG: bca:BCE_5037 4.0e-128 pgi; phosphoglucose isomerase K01810; Psort location: Cytoplasmic, score: 9.98; Belongs to the GPI family.
 
 
 
 0.510
TreP
PTS system sucrose-specific IIBC component; KEGG: lpl:lp_0185 1.0e-152 pts1BCA; sucrose PTS, EIIBCA K02808:K02809:K02810; Psort location: CytoplasmicMembrane, score: 10.00.
      
 0.499
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
  
    0.460
pyk
Pyruvate kinase; KEGG: tte:TTE1815 8.3e-192 pykF; pyruvate kinase K00873; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.411
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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