STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carAKEGG: ldb:Ldb1070 8.4e-96 carA2a; carbamoyl-phosphate synthase small chain K01954; Psort location: Cytoplasmic, score: 8.87; Belongs to the CarA family. (365 aa)    
Predicted Functional Partners:
carB
KEGG: cpe:CPE2572 0. carB; carbamoyl-phosphate synthetase catalytic subunit K01955; Psort location: Cytoplasmic, score: 8.87.
 0.999
carB-2
KEGG: cpe:CPE2572 0. carB; carbamoyl-phosphate synthetase catalytic subunit K01955; Psort location: Cytoplasmic, score: 8.87.
 0.999
pyrB
KEGG: cno:NT01CX_0395 1.6e-110 pyrB; aspartate carbamoyltransferase K00608; Psort location: Cytoplasmic, score: 9.98; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 0.997
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
  
 
 0.984
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
  
 0.976
gltA
KEGG: bth:BT4310 1.2e-201 NADPH-dependent glutamate synthase small chain K00266; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.968
purF-2
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
  
 
 0.933
glnA
Glutamate--ammonia ligase, catalytic domain protein; KEGG: cpr:CPR_2573 1.3e-179 glutamine synthetase, putative K01915; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.920
glmS
Glutamine-fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
 0.906
carA-2
KEGG: cpe:CPE2573 3.5e-106 carA; carbamoyl-phosphate synthetase glutaminase subunit K01956; Psort location: Cytoplasmic, score: 8.87.
  
  
 
0.906
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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