STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GltC_3KEGG: shn:Shewana3_3435 2.5e-17 transcriptional regulator, LysR family K06022; Psort location: Cytoplasmic, score: 9.98; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
cysL
KEGG: shn:Shewana3_3435 5.9e-11 transcriptional regulator, LysR family K06022; Psort location: Cytoplasmic, score: 9.98; Belongs to the LysR transcriptional regulatory family.
  
     0.773
CysL_2
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 2.7e-06 transcriptional regulator, LysR family K06022; Psort location: Cytoplasmic, score: 9.98; Belongs to the LysR transcriptional regulatory family.
  
     0.742
YdiM
Transporter, major facilitator family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.715
EEA86251.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: lwe:lwe0460 6.0e-228 NADH:flavin oxidoreductase K00359; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.525
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
   
 0.508
cysE
KEGG: ctc:CTC00351 1.8e-54 serine acetyltransferase K00640; Psort location: Cytoplasmic, score: 9.65.
     
 0.413
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.