STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SsuBABC transporter, ATP-binding protein; KEGG: mja:MJ0412 1.6e-60 tauB; putative taurine transport system ATP-binding protein K02049; Psort location: CytoplasmicMembrane, score: 9.49. (253 aa)    
Predicted Functional Partners:
SsuC
KEGG: rha:RHA1_ro08170 1.5e-18 ABC transporter, permease component; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.972
EEA84593.1
Hypothetical protein.
 
  
 0.951
RibX
ABC transporter, permease protein; KEGG: lwe:lwe1444 4.5e-17 opuCB; glycine betaine/L-proline ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
 0.896
SsuA
Hypothetical protein; KEGG: saz:Sama_0193 0.0015 tRNA (uracil-5-)-methyltransferase K00557.
 
  
 0.800
EEA84597.1
Hypothetical protein.
       0.773
EEA84591.1
Putative permease; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.749
NatA
KEGG: fal:FRAAL3905 1.8e-36 putative ABC-transport protein, ATP-binding component; Psort location: CytoplasmicMembrane, score: 9.49.
 
    
0.684
MerB
Hypothetical protein; KEGG: sep:SE0086 0.0025 organomercurial lyase.
       0.659
EEA84600.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.658
EEA84595.1
Hypothetical protein.
     
 0.654
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.