STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PbpFTransglycosylase; KEGG: tte:TTE0314 1.1e-77 mrcA; Membrane carboxypeptidase (penicillin-binding protein) K05366; Psort location: Extracellular, score: 9.55. (773 aa)    
Predicted Functional Partners:
MrcA
Transglycosylase; KEGG: tte:TTE0314 4.1e-41 mrcA; Membrane carboxypeptidase (penicillin-binding protein) K05366; Psort location: Extracellular, score: 8.10.
  
  
 
0.923
DacB
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: oih:OB1842 1.7e-40 dacF; D-alanyl-D-alanine carboxypeptidase K07258; Belongs to the peptidase S11 family.
  
 
 0.915
DacF
Hypothetical protein; KEGG: tte:TTE0925 1.4e-56 dacC; D-alanyl-D-alanine carboxypeptidase K01286; Belongs to the peptidase S11 family.
  
 
 0.909
MrdA
Penicillin-binding protein, transpeptidase domain protein; KEGG: swo:Swol_1638 1.0e-82 peptidoglycan glycosyltransferase K05364; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
 
 0.854
DivIVA
DivIVA domain protein; KEGG: lwe:lwe2040 3.7e-22 cell division protein DivIVA K01549; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.810
MrdB
Putative rod shape-determining protein RodA; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family.
 
 
 
 0.653
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.618
EEA84456.1
Hypothetical protein.
       0.561
EEA85135.1
Hypothetical protein; KEGG: vfi:VFA0135 7.0e-08 DNA helicase II K01529; Psort location: Cytoplasmic, score: 8.87.
  
     0.528
mltG
YceG family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.514
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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