STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YdcP_2Peptidase, U32 family; KEGG: ctc:CTC02275 1.7e-145 protease K08303; Psort location: Cytoplasmic, score: 8.87. (809 aa)    
Predicted Functional Partners:
mutX
Mutator MutT protein; KEGG: spd:SPD_1031 3.3e-37 mutX; mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTPase) K01529; Psort location: Cytoplasmic, score: 8.87.
       0.774
pheT
KEGG: tte:TTE1688 8.7e-220 pheT; phenylalanyl-tRNA synthetase beta subunit K01890; Psort location: Cytoplasmic, score: 9.98.
  
    0.587
EEA85226.1
O-methyltransferase; KEGG: cpe:CPE1772 7.7e-54 probable O-methyltransferase K00599; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.564
ZapA
Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
     
 0.527
pheS
KEGG: tte:TTE1689 1.1e-120 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889; Psort location: Cytoplasmic, score: 10.00.
  
    0.434
Udk_2
Phosphoribulokinase/uridine kinase family protein; KEGG: tte:TTE1778 3.4e-122 udk; uridine kinase K00876; Psort location: Cytoplasmic, score: 8.87.
  
    0.414
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.