STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cddCytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (128 aa)    
Predicted Functional Partners:
udp
Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family.
  
 
 0.967
ybeY
Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
  
 0.950
Udk_2
Phosphoribulokinase/uridine kinase family protein; KEGG: tte:TTE1778 3.4e-122 udk; uridine kinase K00876; Psort location: Cytoplasmic, score: 8.87.
    
 0.935
YfkN_2
5'-nucleotidase, C-terminal domain protein; KEGG: bsu:BG12930 1.1e-21 yfkN; similar to 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01081:K01119; Psort location: Cellwall, score: 10.00; Belongs to the 5'-nucleotidase family.
 
 
 0.933
PunA
Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
 
 
 0.927
YfkN_3
5'-nucleotidase, C-terminal domain protein; KEGG: bcl:ABC1445 3.0e-43 5'-nucleotidase K01081; Psort location: Extracellular, score: 7.62; Belongs to the 5'-nucleotidase family.
 
  
  0.915
YfkN_1
Ser/Thr phosphatase family protein; KEGG: tte:TTE0343 1.4e-33 ushA; 5-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases' K01119; Belongs to the 5'-nucleotidase family.
    
  0.903
era
Putative GTP-binding protein era-like protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
  
 0.762
Tmk
Hypothetical protein; KEGG: ctc:CTC00220 3.3e-69 thymidylate kinase K00943; Psort location: Cytoplasmic, score: 8.87.
    
 0.633
EEA84509.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.561
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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