STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YdcVABC transporter, permease protein; KEGG: cdi:DIP0495 7.0e-12 putative molybdenum ABC transport system (integral membrane and ATP-binding proteins) K02017:K02018; Psort location: CytoplasmicMembrane, score: 10.00. (265 aa)    
Predicted Functional Partners:
PotD
ABC transporter, solute-binding protein.
 
 0.999
PotB
ABC transporter, permease protein; KEGG: syn:sll0739 1.5e-12 modBC; ABC-type molybdate transport system permease/ATP-binding protein K02018; Psort location: CytoplasmicMembrane, score: 10.00.
 
0.998
potA-2
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 0.995
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 0.859
PotA_4
ABC transporter, ATP-binding protein; KEGG: mfl:Mfl511 2.7e-58 spermidine/putrescine ABC transporter ATP-binding component K02052; Psort location: CytoplasmicMembrane, score: 9.82.
  
 0.794
YcjO
ABC transporter, permease protein; KEGG: hpa:HPAG1_0451 1.6e-13 molybdenum ABC transporter ModB K06022; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
0.639
PotA_3
ABC transporter, ATP-binding protein; KEGG: mfl:Mfl511 1.3e-60 spermidine/putrescine ABC transporter ATP-binding component K02052; Psort location: CytoplasmicMembrane, score: 9.49.
   
 0.598
PuuR_2
Cupin domain protein; KEGG: psp:PSPPH_2917 7.1e-09 DNA-binding protein K00517; Psort location: Cytoplasmic, score: 8.87.
       0.581
LytG
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; KEGG: cno:NT01CX_2157 9.0e-28 N-acetylmuramoyl-L-alanine amidase CwlL precursor (cellwall hydrolase) (autolysin) K01446; Psort location: Extracellular, score: 9.55.
       0.476
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.