STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEA84395.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (334 aa)    
Predicted Functional Partners:
RluD_3
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
     0.835
EEA85135.1
Hypothetical protein; KEGG: vfi:VFA0135 7.0e-08 DNA helicase II K01529; Psort location: Cytoplasmic, score: 8.87.
  
     0.759
LapB
Tetratricopeptide repeat protein; KEGG: xla:447694 3.5e-05 MGC80426; MGC80426 protein K00754; Psort location: Cytoplasmic, score: 8.87.
  
     0.747
EEA84629.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.674
EEA85469.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.97.
  
     0.668
EEA84434.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.665
EEA85107.1
Hypothetical protein.
  
    0.661
YjcD_1
UvrD/REP helicase; KEGG: sth:STH2968 1.9e-57 putative ATP-dependent DNA helicase K01529; Psort location: Cytoplasmic, score: 8.87.
  
     0.652
EEA84309.1
Hypothetical protein; KEGG: mja:MJ0152 0.0044 carbon monoxide dehydrogenase, subunit alpha K00191; Psort location: Cytoplasmic, score: 8.87.
  
     0.650
XerC_1
Site-specific recombinase, phage integrase family; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
  
     0.642
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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