STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEA84342.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (288 aa)    
Predicted Functional Partners:
BaiB
AMP-binding enzyme; KEGG: hne:HNE_0099 2.0e-71 baiB; bile acid-coenzyme A ligase; Psort location: Cytoplasmic, score: 9.55.
   
 
 0.609
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.598
EEA84341.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.588
NatB
ABC-2 type transporter; KEGG: lsl:LSL_1181 0.0039 baeS; two component system histidine kinase; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.544
FtsN
Sporulation and cell division repeat protein; KEGG: mpe:MYPE6470 1.9e-17 parC; DNA topoisomerase IV subunit A K02621; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.496
Cca
Hypothetical protein; KEGG: ctc:CTC01205 1.3e-92 tRNA nucleotidyltransferase (CCA-adding enzyme) K00974; Psort location: Cytoplasmic, score: 8.87.
       0.492
EEA84483.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.482
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.472
HemN_2
Coproporphyrinogen dehydrogenase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.455
GloA
Glyoxalase family protein; KEGG: fnu:FN0356 1.1e-38 lactoylglutathione lyase K01759; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.403
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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