STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEA84239.1Hypothetical protein. (102 aa)    
Predicted Functional Partners:
EEA84240.1
Hypothetical protein; KEGG: pfa:MAL8P1.23 0.00090 ubiquitin-protein ligase 1, putative; Psort location: Cytoplasmic, score: 8.87.
       0.773
RsbV
STAS domain protein; KEGG: ava:Ava_0744 5.6e-08 anti-sigma-factor antagonist (STAS) and sugar transfersase K00996; Psort location: Cytoplasmic, score: 8.87.
       0.624
SigB
RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; KEGG: reh:H16_A2373 4.0e-18 rpoS; DNA-directed RNA polymerase sigma subunit (sigma38) K00960; Psort location: Cytoplasmic, score: 9.98; Belongs to the sigma-70 factor family.
       0.569
RsbW
KEGG: bcl:ABC0815 8.4e-25 rsbW; anti-sigma B factor K04757; Psort location: Cytoplasmic, score: 8.87.
       0.569
EEA84241.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.456
Your Current Organism:
Clostridium hiranonis
NCBI taxonomy Id: 500633
Other names: Clostridium hiranonis DSM 13275, Clostridium hiranonis str. DSM 13275, Clostridium hiranonis strain DSM 13275, [. hiranonis DSM 13275, [Clostridium] hiranonis DSM 13275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.