Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dfx_2 | EEA84116.1 | CLOHIR_02239 | CLOHIR_02240 | Hypothetical protein; KEGG: pca:Pcar_2347 1.8e-06 desulfoferrodoxin K05919. | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | 0.545 |
EEA84116.1 | Dfx_2 | CLOHIR_02240 | CLOHIR_02239 | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | Hypothetical protein; KEGG: pca:Pcar_2347 1.8e-06 desulfoferrodoxin K05919. | 0.545 |
EEA84116.1 | EEA84723.1 | CLOHIR_02240 | CLOHIR_01683 | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. | 0.494 |
EEA84116.1 | EEA85013.1 | CLOHIR_02240 | CLOHIR_01373 | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. | 0.426 |
EEA84116.1 | HadI_2 | CLOHIR_02240 | CLOHIR_00245 | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | Putative CoA-substrate-specific enzyme activase; KEGG: rpa:RPA0659 5.5e-17 badF; benzoyl-CoA reductase subunit K04114. | 0.406 |
EEA84116.1 | cbh | CLOHIR_02240 | CLOHIR_00572 | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | Choloylglycine hydrolase; KEGG: lmf:LMOf2365_2098 4.3e-131 cbH; choloylglycine hydrolase K01442. | 0.448 |
EEA84116.1 | fucO | CLOHIR_02240 | CLOHIR_02242 | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | Lactaldehyde reductase; KEGG: cpf:CPF_1046 1.4e-157 fucO; lactaldehyde reductase K00048; Psort location: Cytoplasmic, score: 9.98. | 0.656 |
EEA84723.1 | EEA84116.1 | CLOHIR_01683 | CLOHIR_02240 | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | 0.494 |
EEA85013.1 | EEA84116.1 | CLOHIR_01373 | CLOHIR_02240 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | 0.426 |
HadI_2 | EEA84116.1 | CLOHIR_00245 | CLOHIR_02240 | Putative CoA-substrate-specific enzyme activase; KEGG: rpa:RPA0659 5.5e-17 badF; benzoyl-CoA reductase subunit K04114. | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | 0.406 |
cbh | EEA84116.1 | CLOHIR_00572 | CLOHIR_02240 | Choloylglycine hydrolase; KEGG: lmf:LMOf2365_2098 4.3e-131 cbH; choloylglycine hydrolase K01442. | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | 0.448 |
fucO | EEA84116.1 | CLOHIR_02242 | CLOHIR_02240 | Lactaldehyde reductase; KEGG: cpf:CPF_1046 1.4e-157 fucO; lactaldehyde reductase K00048; Psort location: Cytoplasmic, score: 9.98. | Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87. | 0.656 |